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Whole genome sequencing (WGS) has become the new gold standard for bacterial outbreak investigation, due to the high resolution available for typing. 4Personalized Health Basel, University of Basel, Basel, Switzerland.3DBM Bioinformatics Core Facility, SIB Swiss Institute of Bioinformatics, Basel, Switzerland.2Applied Microbiology Research, Department of Biomedicine, University of Basel, Basel, Switzerland.1Division of Clinical Bacteriology and Mycology, University Hospital Basel, Basel, Switzerland.Seth-Smith 1,2,3 *, Ferdinando Bonfiglio 2,4, Aline Cuénod 1,2, Josiane Reist 2, Adrian Egli 1,2 and Daniel Wüthrich 1,2,3
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